IQ-TREE multicore version 2.0.3 for Linux 64-bit built Apr 26 2020
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    cn47 (AVX2, FMA3, 125 GB RAM)
Command: /home/smg655/.conda/envs/iqtree/bin/iqtree -t All_Species_m2_pseudogene.nwk -s All_Species_m2_pseudogene.nexus --scf 100 --prefix concord_pseudogene -T 2
Seed:    242695 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Apr  7 13:54:56 2021
Kernel:  AVX+FMA - 2 threads (2 CPU cores detected)

Reading alignment file All_Species_m2_pseudogene.nexus ... Nexus format detected
Alignment has 26 sequences with 425 columns, 407 distinct patterns
424 parsimony-informative, 0 singleton sites, 0 constant sites
WARNING: Some sequence names are changed as follows:
ActMar  GA -> ActMar__GA
AldGig  GA -> AldGig__GA
ApaSpi  TT -> ApaSpi__TT
BatTri  NN -> BatTri__NN
CarIns  CA -> CarIns__CA
CheAbi  GA -> CheAbi__GA
CheMyd  CA -> CheMyd__CA
CheSer  CA -> CheSer__CA
ChrPic  GA -> ChrPic__GA
CuoAmb  GA -> CuoAmb__GA
CuoMcc  GA -> CuoMcc__GA
DerCor  CA -> DerCor__CA
DerMaw  TA -> DerMaw__TA
EmyOrb  NN -> EmyOrb__NN
EmySub  CA -> EmySub__CA
GopAga  GA -> GopAga__GA
MalTer  GA -> MalTer__GA
MauRee  GA -> MauRee__GA
MesTub  CA -> MesTub__CA
PelCas  CA -> PelCas__CA
PelSin  CT -> PelSin__CT
PlaMeg  GA -> PlaMeg__GA
PodExp  CA -> PodExp__CA
SteCar  TA -> SteCar__TA
TerCar  GA -> TerCar__GA
TraScr  GA -> TraScr__GA

            Gap/Ambiguity  Composition  p-value
   1  ActMar__GA    1.88%    passed     96.36%
   2  AldGig__GA    1.65%    passed      7.37%
   3  ApaSpi__TT    1.88%    passed     36.65%
   4  BatTri__NN   47.76%    passed     90.49%
   5  CarIns__CA    2.59%    passed     97.04%
   6  CheAbi__GA   11.76%    passed     23.88%
   7  CheMyd__CA    1.41%    passed     88.96%
   8  CheSer__CA    6.35%    passed     80.76%
   9  ChrPic__GA    4.71%    passed     98.65%
  10  CuoAmb__GA    1.65%    passed     83.19%
  11  CuoMcc__GA    0.47%    passed     77.47%
  12  DerCor__CA    1.18%    passed     48.23%
  13  DerMaw__TA    1.41%    passed     82.96%
  14  EmyOrb__NN   41.88%    passed     98.11%
  15  EmySub__CA    2.12%    passed     98.56%
  16  GopAga__GA    0.24%    passed     29.79%
  17  MalTer__GA    2.12%    passed     99.13%
  18  MauRee__GA    1.18%    passed     82.64%
  19  MesTub__CA    2.59%    passed     72.04%
  20  PelCas__CA    7.53%    passed     31.40%
  21  PelSin__CT    2.12%    passed     10.31%
  22  PlaMeg__GA    0.00%    passed     77.35%
  23  PodExp__CA   12.47%    passed     30.10%
  24  SteCar__TA    2.59%    passed     48.88%
  25  TerCar__GA    1.41%    passed     93.59%
  26  TraScr__GA    1.18%    passed     92.10%
****  TOTAL         6.24%  0 sequences failed composition chi2 test (p-value<5%; df=3)
Reading tree All_Species_m2_pseudogene.nwk ...
un-rooted tree with 26 taxa and 49 branches
Computing site concordance factor...
0.006 sec
Tree with concordance factors written to concord_pseudogene.cf.tree
Annotated tree (best viewed in FigTree) written to concord_pseudogene.cf.tree.nex
Tree with branch IDs written to concord_pseudogene.cf.branch
Concordance factors per branch printed to concord_pseudogene.cf.stat
Date and Time: Wed Apr  7 13:54:56 2021
